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Bioinformatics Processing and VCF File Generation

Active

Federal

Contract Overview

Solicitation details, issuing organization, response deadlines, documents, and interested companies for this government contract opportunity.

AI Contract Overview

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The contract involves processing raw sequencing data from 1,920 wheat samples to produce a consolidated VCF file containing variant calls. The scope of work includes alignment of sequencing reads, variant calling to identify genetic variations, and applying quality filtering to ensure the accuracy and reliability of the data. The project is designed to deliver a single merged VCF file that integrates variant information across all samples, which is essential for downstream genetic analysis and research. This subcontract is a total small business set-aside under the NAICS code 541612 and is issued by the USDA Agricultural Research Service in Raleigh, North Carolina. The work is focused on bioinformatics processing and variant data generation, supporting agricultural genomics initiatives. The contract was posted in early March 2026 and aims to leverage specialized computational biology expertise to advance wheat genomics and improve crop research outcomes.

General Info

Process 1,920 wheat samples' sequencing data to generate a consolidated, quality-filtered VCF file.

Agency

Department Of Agriculture → USDA Ars Afm Apd

NAICS

541612 - Human Resources Consulting Services

Place of Performance

Raleigh, NC, 27607, USA

Set-Aside

SBA

Documents

This scope was carved out of 1232SA26Q0236.

The full solicitation package (4 documents), including the RFP, is on the prime solicitation, not on this scope.

View the prime solicitation

Wheat Genotyping

AI Contract Breakdown

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Timeline

PostedMar 6

subcontract

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Organization & Contact Information

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AgencyDepartment Of Agriculture → USDA Ars Afm Apd

ContactsNo contacts available

OfficeN/A

Organization / AgencyDepartment Of Agriculture → USDA Ars Afm Apd

Office AddressN/A

ContactsNo contact information available

Full Description

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Process raw sequencing data to generate a single merged VCF file with variant calls from 1,920 wheat samples, including alignment, variant calling, and quality filtering.

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